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Recent Posts
- New gene page, new Bgee interface
- Confirming that autism and epilepsy genes are expressed in specific brain areas
- Gene expression enrichment tests are sensitive enough to detect where your background data came from #TopAnat
- When fold-enrichment is more informative than p-values: #TopAnat analysis of autism genes from GWAS
- #TopAnat where are genes significant in a breast cancer GWAS expressed?
Twitter
- RT @marc_rr: 3rd “open science” poster prize to @Bgeedb R package f1000research.com/posters/6-1658 #BC2basel 4 days ago
- RT @marc_rr: @Bgeedb Ftp: ftp://ftp.bgee.org/current/download/processed_expr_values/rna_seq/Homo_sapiens_GTExonly/ R package: https://t.co/… 5 days ago
- RT @marc_rr: If you use #GTEx in your analysis, may I suggest you check our curated healthy-only subset @Bgeedb, avaible as ftp and in R #B… 5 days ago
- Bgee posters at #BC2basel: A22- R package BgeeDB f1000research.com/posters/6-1658 A23- database presentation f1000research.com/posters/6-1648 6 days ago
- RT @BC2Conference: Due to noise on #bc2, please note that the official hashtag for Basel Computational Biology Conference is #bc2basel: htt… 1 week ago
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Tag Archives: RNA-Seq
Gene expression enrichment tests are sensitive enough to detect where your background data came from #TopAnat
When you invent such a cool toy as TopAnat, you play with it. And then sometimes, you’re afraid that you might have broken it. But then, maybe it’s more robust than you expected. This is such a story. One lab … Continue reading
The contribution of #RNAseq, #microarrays, in situ hybridization and ESTs to #TopAnat gene enrichment signal
In Bgee, we integrate gene expression data from RNA-seq, Affymetrix microarrays, ESTs and in situ hybridization data. It is natural to think that with RNA-seq being so powerful, we should not bother with other sources of information. Yet we still have … Continue reading
Posted in RNA-Seq, topanat
Tagged ESTs, in situ hybridization, Microarray, RNA-Seq, statistics
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Expressed, or not expressed? That is the question!
Bgee provides information about where and when genes are expressed in different species. But what does it mean “to be expressed”? That’s a fundamental question we had to answer before we could introduce RNA-Seq data into the database. Expression does … Continue reading
Posted in bgee update, RNA-Seq, using bgee
Tagged bioinformatics, database, gene expression, RNA-Seq
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